I have looked into the "View table schema" and I am still not clear on how the different fields relate to each other. can you give an example from the segDup data set and explain what it means.
thanks, From: Katrina Learned <[email protected]> To: Kay Jaja <[email protected]> Sent: Friday, September 9, 2011 11:31 AM Subject: Re: [Genome] question related to the downloads from the UCSC database Hi Kay, Thank you for your question. To receive an answer in the timeliest manner and so all our users can benefit from your question and its answer, please resend your email to our mailing list: [email protected]. Thank you, Katrina Learned UCSC Genome Bioinformatics Group On 9/9/11 11:13 AM, Kay Jaja wrote: thanks for your e-mail, I have looked into the "View table schema" and I am still not clear on how the different fields relate to each other. can you give an example from the segDup data set and explain what it means. > > >thanks, > > > >From: Katrina Learned <[email protected]> >To: Kay Jaja <[email protected]> >Cc: "[email protected]" <[email protected]> >Sent: Friday, September 9, 2011 9:02 AM >Subject: Re: [Genome] question related to the downloads from the UCSC database > >Hi Kay, > >For more information about the track and table, please see the track >description: >http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg18&g=genomicSuperDups > >From here, click on "View table schema," and you will find a short description >of each field of the table. > >Please contact the mail list ([email protected]) again if you have any >further questions. > >Katrina Learned >UCSC Genome Bioinformatics Group > > >On 9/8/11 6:19 PM, Kay Jaja wrote: >> I have downloaded the list of segmental >> duplications (hg18) using the following link >> http://hgdownload.cse.ucsc.edu/goldenPath/hg18/database/genomicSuperDups.txt.gz >> from that file, you have chrom, >> chromStart, chromEnd, which is the location of the segmental duplication on >> the >> reference genome. In the fifth column there is a “name” field, How >> is “name” field relate to chrom, chromStart, chromEnd? Also the fields >> OtherChrom, otherStart, otherEnd. >> Thanks, >> _______________________________________________ >> Genome maillist - [email protected] >> https://lists.soe.ucsc.edu/mailman/listinfo/genome > > > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
