Hi Mario, While in blat you can view the source (usually this can be done by right clicking and selecting view source) to see what variables need to be submitted in the form:
e.g. http://genome.ucsc.edu/cgi-bin/hgBlat?db=hg19&type=BLAT's+guess&userSeq=gtttggggccagagtgggcgaggcgcggaggtctggcctataaagtagtc Note that high levels of use will be throttled by our bottleNeck. Depending on what you are trying to do, it may make sense to just download BLAT and the genomes and run blat locally in a batch mode to pre-align all the refSeq sequences of interest. It is also likely that we already have alignments of all refSeq alignments in our downloads area since we have the refSeq track and genbank process. If you have further questions, please contact our mailing list: [email protected]. Vanessa Kirkup Swing UCSC Genome Bioinformatics Group ---------- Forwarded message ---------- From: Mario Inostroza <[email protected]> Date: Thu, Sep 8, 2011 at 9:07 AM Subject: [Genome] Question about online query to BLAT To: [email protected] Hi, I am building a website with some seqRef and I would like to add a link to BLAT the sequence. However I did not find the way to do it. Is that possible? where do I find information like how to submit the sequence, the organism and all the option that one can select on the website? ( http://genome.ucsc.edu/cgi-bin/hgBlat?command=start) Best regards, Mario Inostroza Ponta Académico Departamento de Ingeniería Informática Universidad de Santiago de Chile Teléfono: (+56 2) 71 80 914 [email protected] _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
