Hi Niro, So, you're looking for exons (start/stop coords) within specific genome coordinates? You can use the table browser to do this: http://genome.ucsc.edu/cgi-bin/hgTables. I'd suggest using Track: UCSC Genes, Table: knownGenes and then click the define regions button (next to the region: label). Paste your coordinates into the define regions box and submit. Select your desired output format (you might want to try "selected fields..." so you can only show the information you want in the output).
Your final output will list all the exons that appear within the genomic coordinates you input/filtered by. Please let us know if you have any additional questions: [email protected] - Greg Roe UCSC Genome Bioinformatics Group On 9/12/11 12:28 AM, Niro Pathirage wrote: > How do I find exonic positions from genomic coordinates quickly without > searching for them individually if I have a long list to go through? > > > > This communication is intended only for the named recipient and may contain > information that is confidential, legally privileged or subject to copyright; > the Ludwig Institute for Cancer Research Ltd does not waive any rights if you > have received this communication in error. > The views expressed in this communication are those of the sender and do not > necessarily reflect the views of the Ludwig Institute for Cancer Research Ltd. > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
