Hey Assaf, 1) try using "type bigBed 9" in your trackDb. 2) I was able to reproduce this with your hub on our public site, but it works on our test and preview sites. Thanks for reporting this. We'll make sure that it works on our public site in our next release.
brian On Thu, Sep 15, 2011 at 8:49 AM, Assaf Gordon <[email protected]> wrote: > Hello, > > I've encountered two possible bugs with hubs, or perhaps I'm just doing > something wrong: any help would be appreciated. > > My test hub is here: > http://cancan.cshl.edu/labmembers/gordon/hubs/hubtest1/hub.txt > and it passes the 'hubCheck' without errors. > > -1- > The hub contains a BigBed track for human, loaded with "visibility=pack" and > "itemRgb=On". > The intervals are in these coordinates: chr21:33043300-33104500 . > The BigBed track is displayed in black, and the intervals are displayed as > "bed 3" (i.e. not showing exon/intron structure). > > If I load the exact same file as a custom track, the intervals are shown in > color, and with exon/intron structure: > track type=bigBed name=BigBedDirectLinkTest itemRgb=On visibility=3 > bigDataUrl=http://cancan.cshl.edu/labmembers/gordon/hubs/hubtest1/hg19/hg19.bigbed > > > -2- > The hub contains 4 genomes: hg19,mm9,dm3,rn4 (in that order). > If my current genome is "human" and I load the hub, all is fine (including > switching to Rat genome, and the hub-tracks are available). > If my current genome is "rat", loading the hub fails with: > "requested hub at > http://cancan.cshl.edu/labmembers/gordon/hubs/hubtest1/hub.txt does not have > data for rn4" > > > Regards, > -gordon > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
