Hi Sandeep, I'm assuming that you are referring to the GenBank version number suffix. If this is the case, the data is located in a table called gbStatus. Here is the schema for the hg19 RefSeq track:
http://genome.ucsc.edu/cgi-bin/hgTables?db=hg19&hgta_group=genes&hgta_track=refGene&hgta_table=refGene&hgta_doSchema=describe+table+schema If you scroll down the page you will see the "Connected Tables and Joining Fields " tables where you will see a link to the schema for gbStatus. You can selectively download this data by using our table browser tool. To get to the table browser click on "Tables" from the blue navigation bar. Select the clade, genome, and assembly you are interested in. Set the following: group: Genes and Gene Prediction Track track: RefSeq Genes table: refGene region: genome To get output from the connected tables set: output format: selected fields from primary and related tables click "get output" Select the fields that you would like displayed in your output and make sure to select from Linked Tables: hg19 gbStatus To further refine what fields you want displayed from the gbStatus table click on: "Allow Selection From Checked Tables" and then select the fields that you would like to have displayed. Once you have made your selections, click "get output" We hope this is useful. If you have further questions, please contact the mailing list: [email protected]. Vanessa Kirkup Swing UCSC Genome Bioinformatics Group ---------- Forwarded message ---------- From: Sandeep Sanga <[email protected]> Date: Thu, Sep 15, 2011 at 12:49 PM Subject: [Genome] RefSeq gene model, transcript version numbers? To: "[email protected]" <[email protected]> Hello, We've noticed that gene model file for RefSeq transcripts does not provide version numbers for the transcripts. Is this information available somewhere else, or does UCSC Genome Browser intend to add this information in the future? Best regards, Sandeep _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
