Hey Gordon, Thanks for reporting this. This is now fixed on genome-test. The fix should make it to the public site a week from Tuesday.
brian On Thu, Sep 15, 2011 at 3:42 PM, Assaf Gordon <[email protected]> wrote: > Hello, > > I've encountered a problem showing BAM tracks (either bug or my configuration > problem?). > > When using "bamColorMode=tag" in "pack" mode, the read names are not > displayed, even if the "Display Read Name" option is checked. > (also happens in the genome-test server). > > To reproduce, load the following tracks (in dm3): > ---- > browser position chr2L:8040-8090 > track type=bam db=dm3 visibility=3 name=ColorbyStrand > bigDataUrl=http://cancan.cshl.edu/labmembers/gordon/hubs/YC_test/YC_test2.bam > track type=bam db=dm3 visibility=3 name=ColorbyTag bamColorMode=tag > bamColorTag=YC > bigDataUrl=http://cancan.cshl.edu/labmembers/gordon/hubs/YC_test/YC_test2.bam > ---- > > Both tracks have "Display Read Names" setting set to "on", but the one using > custom colors does not show the names. > Switching from "pack" to "full" does show the names, > and switching back to "bamColorMode=strand" does show the read names. > > Regards, > -gordon > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
