I used blat on my custom reference and query sequence in command line. I have two output files from blat. One is psl and other is blast format. When I compared the results it looks different, there are no matches above 124 and below 34 in psl. Blast format output result has higher of 272 and low of 12. Why is it so different? I have not changed any parameter, everything is in default. I appreciate help from you.
Thank you, Shakuntala Fathepure Dept. of Botany Oklahoma State University Stillwater, OK 74078 _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
