Hi Elena, Thanks for looking through the mailing list archives. I'm not surprised that you didn't find anything on this one!
The data visible from the hgEncodeVocab cgi is actually stored in a file called cv.ra. There are a couple of versions of this file available. The one that corresponds to our test site, http://genome-test.cse.ucsc.edu/, and that has more information and is liable to change at any time is located here: http://hgdownload-test.cse.ucsc.edu/goldenPath/encodeDCC/ The one that we make available to mirrors and that is updated approximately every three weeks (when we release a new version of cgis) is available here: ftp://hgdownload.cse.ucsc.edu/apache/cgi-bin/encode/ Some of our engineers noted that the information here doesn't link antibody names to protein IDs, but it does get you a link from antibody names to GeneCard IDs, so with any luck your task will be easier. If you have further questions, please contact us again at [email protected]. -- Brooke Rhead UCSC Genome Bioinformatics Group On 10/7/11 2:40 AM, Elena Grassi wrote: > Hello, > > I've done a (hopefully deep enough) search on the ml but I didn't find > what I'm looking for. > I'd like to automatically get info from the tables produced by the > hgEncodVocab cgi (basically linking an antibody name to a protein id > of some kind; by hand > I can do it following the GeneCards link but I'd prefer to avoid > parsing two html pages...) - I suppose that it takes data from a table > in the db but I haven't found the right table in the table browser. > Can anyone point me in the right direction? > > Thanks, > Elena Grassi > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
