Hi Vijay, On our preview server, you can use File Search to find and download the file(s) you are requesting. Go to http://genome-preview.ucsc.edu/cgi-bin/hgFileSearch and in the drop down section, set "Experiment(Assay) type" to "ChIP-seq", "Antibody or target protein" to "GATA-1", and "Cell, tissue, or DNA sample" to "PBDE". You will see the files for signals and peaks. To narrow down to see signals for a specific combination, you can change "Data Format:" to "Signal (bigWig) - self index, often remote wiggle format". To get an idea of all the ChIP-seq signals available, you can set the data format to Signal (bigWig)..." and in ENCODE terms set "Experiment (Assay) type" to "ChIP-seq.
Please keep in mind that this track (and others) has not yet been reviewed by the quality assurance team, and may undergo some changes; in general, the preview server has a lot of untested and experimental tracks. I hope this information helps. Please contact us again at [email protected] if you have any further questions. --- Luvina Guruvadoo UCSC Genome Bioinformatics Group On 10/8/2011 5:59 PM, Vijay G. Sankaran wrote: > Hi, > > I was just browsing the ENCODE tracks and noticed that there are > ChIP-seq peaks available for a variety of transcription factors in a > number of cell types (i.e. GATA-1 in PBDE from Stanford). However, I > could not find a way to access or download the ChIP-seq signal, as > opposed to the calculated peak data that is available on the UCSC > browser. I would really appreciate any information you may be able to > provide about this. Thanks so much! > > Best wishes, > Vijay > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
