Hi Lee, You are correct; there is no longer an exceptions table. You can find the exceptions in the snp132 table itself, in the "exceptions" field. For a description of all the exceptions, you can use the snp132ExceptionsDesc table, but this table does not show up in the Table Browser when the SNP track is selected (this is a feature we are currently working on). However, if you select "all tables" in the Table Browser, snp132ExceptionsDesc will show up. You can also find this table on our downloads server here: hgdownload.cse.ucsc.edu/goldenPath/hg19/database/snp132ExceptionDesc.txt.gz
I hope this helps. Please contact us again at [email protected] if you have any further questions. --- Luvina Guruvadoo UCSC Genome Bioinformatics Group On 10/11/2011 12:39 PM, Sam, Lee wrote: > Hi, I'm looking for the snp132 exceptions file on the FTP server for hg19 > (which is present for snp131 and snp130 for hg18) but I can't seem to find > it. It also looks like the format of the snp132 table has changed - have > there been changes such that the exceptions file is no longer generated? > > Thanks, > -Lee Sam > ********************************************************** > Electronic Mail is not secure, may not be read every day, and should not be > used for urgent or sensitive issues > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
