Hi Elham,

Please take a look at some of our training materials to help answer your 
questions:
http://genome.ucsc.edu/training.html

Also see our In-Silico PCR tool: http://genome.ucsc.edu/cgi-bin/hgPcr

If you have additional questions after reviewing the training material, 
please contact us again at [email protected].

---
Luvina Guruvadoo
UCSC Genome Bioinformatics Group


On 10/13/2011 7:39 AM, Elham Mohammadi wrote:
> Hi,
> Could you please tell me step by step what to do to get to NOS3 (eNOS) 
> chromosome region, the part that codes for the protein (has a ref Seq), and 
> then mark the 1KB upstream of the first ATG (methionine, that is used in 
> translation to protein), and then make a primer for PCR sequencing.
> It would be good to be able to do the reverse--design a primer way downstream 
> of the end of the gene and then try to PCR into somewhere in the middle or 
> even beginning of the gene.
> Thank you. Elham
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