Good Evening Eriko: Did you view the chrM sequence in the genome browser after you turned on the custom data tracks ? Enter the string: chrM in the position/search box on the genome browser, press the "jump" button.
--Hiram ----- Original Message ----- From: "eriko shimada" <[email protected]> To: [email protected] Sent: Friday, October 21, 2011 4:45:35 PM Subject: [Genome] Fwd: Mitochondrial DNA To Whom it May Be of Concern, I am trying to look at an RNA-seq Data done on a mitochondrial sample that contains mainly mitochondrial but also a few nuclear genes. The GSE number from gene expression omnibus is GSE30772. But evertime I load it, the screen shows no data, even for locations that I should expect a nuclear gene ( rpph1, rmrp) 1. Can I look at mitochondrial genomes using this program? 2. What am I doing in correctly to load the .wig file? (I go to add custom tracks, select the file location and click load, then change the visibility option to full). Do the files need to be in a specific location to be loaded correctly? Thank you. Sincerely yours, Eriko Shimada Graduate Student Dept of Pathology and Laboratory Medicine Teitell Laboratory Univ. of California, Los Angeles. _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
