Hi Filip, Unfortunately, our documentation was incorrect. The bedGraphToBigWig program doesn't accept gzipped bedGraph files as input. I have removed that line from the help page. I'm sorry our documentation wasn't correct.
Please contact the mail list ([email protected]) again if you have any further questions. Katrina Learned UCSC Genome Bioinformatics Group On 11/4/11 8:28 AM, Filip Pattyn wrote: > Hi, > > I tried to follow the guidelines on > http://130.91.8.212/GenomeBrowser/goldenPath/help/bigWig.html to create > a bigWig file with the command 'bedGraphToBigWig'. > In step 5 is stated that the program also accepts a gzipped input file > but this doesn't seem to work with me. > I'm optimizing an analysis pipeline and doing a lot of bedGraphToBigWig > conversions for a specific project in parallel. Since bedGraphToBigWig > doesn't accept stdin, I try to minimize the number of processing steps. > Is this functionality removed or is this related to the OS? Our server > is a 64 bit Ubuntu 10.04. > > Best regards, > > Filip > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
