Hi Nikita, Please see this Frequently Asked Question (FAQ) for more information on how to retrieve promoter regions: http://genome.ucsc.edu/FAQ/FAQdownloads.html#download18
Also feel free to search the Genome mailing list archives by visiting our home page and clicking on "Contact Us" (http://genome.ucsc.edu/contacts.html), or email us again at [email protected] if you have any further questions. --- Luvina Guruvadoo UCSC Genome Bioinformatics Group On 11/17/2011 8:51 PM, Nikita Pednekar wrote: > Sir, > > Below are the step I am using… > > ******************************* > > Clicking on genomes > > Selecting Human > > Entering gene symbol in ‘gene’ textfield. Click submit > > Clicking on first cartoon of gene (UCSC gene based on RefSeq, UniProt, > GenBank, CCDS and comparative genomics) > > In ‘sequence and links to tools& database’ , click on ‘Genomic sequence > (chr…………) > > Entered 700 in ‘Promoter/upstream’ and 300 in ‘Downstream’. Rest deselect. > Click submit. > > Got seq in FASTA format. > > ******************************* > > However, the downstream 300bp seem to be incorrect in all the cases. > I would like to know how to extract 300 bases downstream of TSS using UCSC > genome. > > Regards, > Nikita Pednekar. > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
