I have map positions for Illumina SNPs that seem to be from NCBI Build 36.2. I don't know how different those would be from 36.1, which seems to be equivalent to hg18, but probably at least close enough for my current purposes. I want to convert them to hg19 (GRCh37). The reason is that I want to use the GRCh37 map here...
http://hapmap.ncbi.nlm.nih.gov/downloads/recombination/2011-01_phaseII_B37/genetic_map_HapMapII_GRCh37.tar.gz ...to get linkage map locations for the Illumina SNPs. I thought maybe the liftOver program can do this, but now I'm not so sure. If I just had a file with a few million SNPs listed with their base-pair positions in both hg18 and hg19, I could use that. Please cc me if you reply because I am not subscribed to this list. I don't even know if my message will get through. The list was mentioned here: http://genome.ucsc.edu/FAQ/FAQdownloads#download28 Mike -- Michael B. Miller, Ph.D. Minnesota Center for Twin and Family Research Department of Psychology University of Minnesota _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
