Hello Rico, This problem has been looked at before on the mailing list. Please see this previously answered question thread for further advice:
https://lists.soe.ucsc.edu/pipermail/genome/2011-September/027213.html Hopefully this information was helpful and answers your question. If you have further questions or require clarification feel free to contact the mailing list at [email protected]. Regards, Pauline Fujita UCSC Genome Bioinformatics Group http://genome.ucsc.edu On 11/23/11 1:54 AM, Richard Burhans wrote: > Folks, > > While using wigToBigWig to convert the primate phyloP scores for the 44-way > alignment with hg18 to bigwig, I found several positions with multiple > scores. Here are links to the files I was trying to convert: > > > http://hgdownload.cse.ucsc.edu/goldenPath/hg18/phyloP44way/primates/chr1.phyloP44way.primate.wigFix.gz > > http://hgdownload.cse.ucsc.edu/goldenPath/hg18/phyloP44way/primates/chr2.phyloP44way.primate.wigFix.gz > > http://hgdownload.cse.ucsc.edu/goldenPath/hg18/phyloP44way/primates/chr3.phyloP44way.primate.wigFix.gz > > http://hgdownload.cse.ucsc.edu/goldenPath/hg18/phyloP44way/primates/chr4.phyloP44way.primate.wigFix.gz > > http://hgdownload.cse.ucsc.edu/goldenPath/hg18/phyloP44way/primates/chr13.phyloP44way.primate.wigFix.gz > > http://hgdownload.cse.ucsc.edu/goldenPath/hg18/phyloP44way/primates/chr16.phyloP44way.primate.wigFix.gz > > http://hgdownload.cse.ucsc.edu/goldenPath/hg18/phyloP44way/primates/chrY.phyloP44way.primate.wigFix.gz > > Here's the problems I found along with proposed solutions: > > o chr1 > o more than one value for chr1 base 220000001 > o suggest changing line 195836790 to "fixedStep chrom=chr1 > start=220000002 step=1" > > o chr2 > o more than one value for chr2 base 60000001 > o more than one value for chr2 base 230000001 > o suggest changing line 59341383 to "fixedStep chrom=chr2 > start=60000002 step=1" > o suggest changing line 222927573 to "fixedStep chrom=chr2 > start=230000002 step=1" > > o chr3 > o more than one value for chr3 base 180000001 > o suggest changing line 173437707 to "fixedStep chrom=chr3 > start=180000002 step=1" > > o chr4 > o more than one value for chr4 base 110000001 > o suggest changing line 104807632 to "fixedStep chrom=chr4 > start=110000002 step=1" > > o chr13 > o more than one value for chr13 base 60000001 > o suggest changing line 41706166 to "fixedStep chrom=chr13 > start=60000002 step=1" > > o chr16 > o more than one value for chr16 base 20000001 > o suggest changing line 19816949 to "fixedStep chrom=chr16 > start=20000002 step=1" > > o chrY > o more than one value for chrY base 20000001 > o suggest changing line 16192938 to "fixedStep chrom=chrY > start=20000002 step=1" > > -rico > > > > > > > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
