Hi UCSC team, I was wondering what tool/package does UCSC use to convert the GTF annotations to BED-12 file. I would like to convert the GTF files (output from Cufflink) into bed file. Could you suggest me which tools to use for the conversion purpose of GTF to BED-12 file.
Secondly, how are GTF files stored in the local UCSC browser. I can see many loading script, such as hgLoadBed, hgLoadMAF and so on in Jame;s Kent package, but did not find the loader script to load GTF files. Could you please suggest me which script is used to load GTF files into the local database. regards Chirag _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
