thanks,
please input position chr1:1,189,287-1,189,302
I attached the figure. you can see it starts 1198291 instead of 1189292.
Yu
________________________________
From: Brooke Rhead <[email protected]>
To: Yuan Jian <[email protected]>
Cc: UCSC <[email protected]>
Sent: Monday, 28 November 2011 10:57 AM
Subject: Re: [Genome] bug?
Hi,
On the GRCh37/hg19 assembly, the graphic for UBE2J2 in the RefSeq Genes track
appears to be correctly displayed, starting at base 1189292. It is a little
confusing when you are zoomed in very closely, because the box that denotes the
gene begins at the tick mark that is labeled 1189291. However, the box is
drawn only to the right of the tick mark, and it is not meant to indicate that
the gene covers 1189291.
In case that was confusing: base 1189291 is an "A", and it is not included in
the gene. Base 1189292 is a "T", and it is included in the gene.
I hope this helps explain what you are seeing! If you have further questions,
please contact us again at [email protected].
--
Brooke Rhead
UCSC Genome Bioinformatics Group
On 11/25/11 7:42 PM, Yuan Jian wrote:
> Hi
> gene UBE2J2 starts at 1189292, but in genome browser it starts at 1189291 (I
> found it when zooming in).
>
> BROWSER | SIZE IDENTITY CHROMOSOME STRAND START END
> QUERY START END TOTAL
> -----------------------------------------------------------------------------------------------------
> browser | 2389 100.0% 1 - 1189292 1209234
> NM_194458 1 2389 2396
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> Genome maillist - [email protected]
> https://lists.soe.ucsc.edu/mailman/listinfo/genome
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