Hi Dandan, Here is the documentation for "browser" lines and "track" lines for custom tracks:
http://genome.ucsc.edu/goldenPath/help/customTrack.html#BROWSER http://genome.ucsc.edu/goldenPath/help/customTrack.html#TRACK Browser lines are name-value pairs that each need to be listed on a separate line, beginning with the word "browser". So, these should be separate lines: browser position chr1 browser hide all There can be multiple track lines in one custom track submission, but they would be used to describe multiple sets of data. I see two track lines in your configuration: track name='DDD Track' description='d methylation level show Track' track name="Dcolor track" description="D methylation level show" visibility=2 useScore=1 If you are only uploading a single dataset, it might be that the first track line is the only one that is being used to display the data, and you need to instead use a single track line. If you have further questions, please contact us again at [email protected]. -- Brooke Rhead UCSC Genome Bioinformatics Group On 12/8/11 6:49 PM, joyan168 wrote: > Dear sir, > > > the score value of my bed data doesn't determine the level of gray. > I have set Edit configuration: track name='DDD Track' description='d > methylation level show Track' browser position chr1 browser hide all > track name="Dcolor track" description="D methylation level show" > visibility=2 useScore=1 and I have sumit the data seccessfully. I > don't know whether I set useScore=1 in an error place. dandan. > _______________________________________________ Genome maillist - > [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
