Hi Luvina, Thank you for the email. I appreciate that and am looking forward to hearing from you.
Thank you, Taka On Dec 21, 2011, at 12:11 PM, Luvina Guruvadoo wrote: > Hi Takafumi, > > We are currently working on an answer to your question and hope to > have a reply to you soon. Thank you for your patience. > > --- > Luvina Guruvadoo > UCSC Genome Bioinformatics Group > > On 12/15/2011 8:10 AM, Takafumi Yamaguchi wrote: >> Hi Greg, >> >> Thank you for the quick response. I don't see the error anymore on >> the test server. >> But I'm still having a problem with seeing " amino acid changes for >> coding SNPs as well as give a chart of amino acid properties if >> there is a non-synonymous change." >> Do you think that I missed anything to set up or does it require >> different tracks? >> >> I'm thinking that the details pages for this track means just >> clicking SNPs on the track or visibility = full, but either cases >> don't seem to show the chart.. >> >> I would appreciate your help, >> >> Taka >> >> >> On Dec 13, 2011, at 2:39 PM, Greg Roe wrote: >> >>> Hi Taka, >>> >>> Thanks for reporting this. One of our engineers fixed this issue; >>> it should be working on our test server now: >>> http://genome-test.cse.ucsc.edu >>> , and will be released to the live site soon. >>> >>> Please let us know if you have any additional comments or >>> questions: genome@soe.ucsc.edu >>> >>> - >>> Greg Roe >>> UCSC Genome Bioinformatics Group >>> >>> >>> On 12/12/11 2:36 PM, Takafumi Yamaguchi wrote: >>>> Hello, >>>> >>>> I have a question that I would like to ask regarding pgSNP format. >>>> It says that "The details pages for this track type will >>>> automatically compute amino acid changes for coding SNPs as well >>>> as give a chart of amino acid properties if there is a non- >>>> synonymous change." >>>> Does it apply to sacCer3 as well? I have errors when I click SNPs >>>> on CDS. >>>> >>>> The errors are like >>>> • Can't start query: >>>> select chrom, txStart, txEnd, name, 0, strand, cdsStart, cdsEnd, >>>> 0, exonCount, exonEnds, exonStarts from knownGene where chrom = >>>> 'chrI' and cdsStart <= 27129 and cdsEnd >= 27130 >>>> • mySQL error 1146: Table 'sacCer3.knownGene' doesn't exist >>>> >>>> I would appreciate your response. >>>> >>>> Best regards, >>>> >>>> Taka >>>> >>>> -- >>>> Takafumi Yamaguchi >>>> Graduate Student >>>> Roth Lab | Donnelly CCBR | University of Toronto >>>> >> >> > _______________________________________________ Genome maillist - Genome@soe.ucsc.edu https://lists.soe.ucsc.edu/mailman/listinfo/genome
