If you have the kent source tree, you can find many MAF manipulation tools to use with your MAF files.
--Hiram ----- Original Message ----- From: "Peng Yu" <pengyu...@gmail.com> To: genome@soe.ucsc.edu Sent: Wednesday, December 21, 2011 8:26:27 PM Subject: [Genome] Alignment extraction from MAF file? Hi, Galaxy MAF tool provides the capability to extract the alignments within a given genomic interval in a target genome. But the paper doesn't give any reference on previous tools on the extraction operation. I think that there should be other tools that can extract alignments. But I'm yet to find one. Does anybody know any other alignment extraction tools? Thanks! http://main.g2.bx.psu.edu/u/dan/p/maf -- Regards, Peng _______________________________________________ Genome maillist - Genome@soe.ucsc.edu https://lists.soe.ucsc.edu/mailman/listinfo/genome
