Hello: I have just downloaded the .bam file from mm9 database that is the UW DNAse I Hypersensitivity for Embroyonic stem cells in mouse.
SO my question is how can I convert the .bam file to .bed file. Can I use BED tools for this . The reason I am asking you this is the files from ENCODE are different with their indexes and all. SO is it ok to convert .bam to .bed file using any conversion tool(BED tools) Thanks for your time Kirthi -- *********** CONFIDENTIALITY NOTICE *********** This transmission may contain confidential information. If you have received this transmission in error, please notify the sender immediately and destroy this material. _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
