Good Afternoon Michael: Can you help us reproduce the procedure you use to get the 121,850,000 size for mm9 chr11 from fetchChromSizes. I can't figure out how you might end up with that number.
The size of chr11 in mm9 is 121843856 and you should have this from fetchChromSizes from any of its three methods. --Hiram M P wrote: > Hi, > I wonder why mm9 chromosome's sizes are not the same in the UCSC? E.g., > when I obtain sizes using UCSC tool 'fetchChromSizes' I get 121,850,000 for > chr11. However, when I try to look on my data in the UCSC browser I get an > error message: "chromEnd larger than chrom chr11 size (121843857 > > 121843856)". > Moreover, I want to mention that sizes from both UCSC sources differ not > only between each other but also from the sizes of mm9 chrs in the > pre-built M. musculus, UCSC mm9 Bowtie index (availablenon the Bowtie > website). > > Kind regards, > Michael. _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
