Hello, I am an assistant professor at ASU who is interested in how chromatin modifications map across the human genome. Your public database and browsing tools are tremendously helpful.
My student and I are interested in filtering peak data of a single track (e.g., H3K27me3 in BJ cells) in order to identify DNA regions within 1 kb centered around annotated transcription start sites (promoters) that show enrichment for certain histone modifications (and potentially other chromatin marks) . We would like to generate a list of genes with certain histone modifications near their promoters. Is there a tool available from your group that would allow us to do such an analysis? Best, ---Karmella -- Karmella A. Haynes, Ph.D. Assistant Professor School of Biological and Health Systems Engineering Arizona State University 501 E. Tyler Mall, ECG 346 Tempe, AZ 85287 E-mail: [email protected] Website: haynes.lab.asu.edu _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
