Good afternoon Luvina, I am a research mentor who is helping an undergrad with her project. Thank you very much for your generous assistance.
We have a question about your earlier instructions for finding promoter regions that overlap with histone methylation peaks (H3K27me3). ~~~ "To find the actual transcription start positions, you will need to query the knownCanonical table in the Table Browser (to get only one isoform). You will also need to filter by strand on the knownGene table by clicking on the 'create' button next to 'filter:', and setting 'strand does match +' (for the positive strand)…" Can you please clarify? Do we download the knownCanonical and knownGene tables separately and filter genes by hand, or is there a way to retrieve only the information from knownGenes that overlaps with knownCanonical? Thank you, ---Karmella -- Karmella A. Haynes, Ph.D. Assistant Professor School of Biological and Health Systems Engineering Arizona State University 501 E. Tyler Mall, ECG 346 Tempe, AZ 85287 E-mail: [email protected]<mailto:[email protected]> Website: haynes.lab.asu.edu _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
