Dear UCSC,
When I was building pslmap, I followed the instraction on page
http://genome.ucsc.edu/admin/jk-install.html.But I have met a problem when
I check my $MACHTYPE, it returned:
"x86_64-unknown-linux-gnu". Then I changed the variable as: "export
MACHTYPE=x86_64". When I restart the teminal, I found that the $MACHTYPE
became "x86_64-unknown-linux-gnu" again.
And this also happened to the env variable MYSQLINC and MYSQLLIBS. So, when
making files or compiling, there are error message like:
ERROR: can not use a MACHTYPE with - character
MACHTYPE is: 'x86_64-unknown-linux-gnu'
it should be something simple: i386 i686 sparc alpha x86_64 ppc, etc...
try the commands: 'uname -m' or 'uname -p' or 'uname -a'
to see a possible value for your system
make: *** [topLibs] Error 255
or
ERROR: missing MYSQLLIBS or MYSQLINC definitions in environment
these are typically,
for bash shell users:
$ export MYSQLLIBS="/usr/lib/mysql/
libmysqlclient.a -lz"
$ export MYSQLINC=/usr/include/mysql
for csh/tcsh shell users:
% setenv MYSQLLIBS "/usr/lib/mysql/libmysqlclient.a -lz"
% setenv MYSQLINC /usr/include/mysql
See also: http://genome.ucsc.edu/admin/jk-install.html
make: *** [hgLib] Error 255
What should I do with this? How can I change the $MACHTYPE and the
envirement variables that are needed for building the tool?
Thank you very much. Looking forward for your reply.
All the best.
Xue
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