how can I download element.bed of a chromosome? On Sat, Jan 28, 2012 at 12:22 AM, reza sodaie <[email protected]> wrote:
> 530 Access Denied - You have too many open sessions already! > what is this error? I wanted to download some multiz alignment from ftp > server, and I used anonymous as user and my email address. > > > On Fri, Jan 27, 2012 at 11:22 PM, reza sodaie <[email protected]>wrote: > >> Thank you very much. >> I need someone's cooperation or supervision in finding some accelerated >> region in genome using RPHAST, may you? or do you know anyone? >> >> >> >> On Fri, Jan 27, 2012 at 10:22 PM, Hiram Clawson <[email protected]>wrote: >> >>> You are referring to the resources that are used to >>> construct the conservation track. You can read all about >>> the conservation track: >>> >>> http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=cons46way >>> >>> Your reference to .GP files are genePred files: >>> >>> http://genome.ucsc.edu/FAQ/FAQformat.html#format9 >>> >>> There are many gene tracks and tables. You decide what genes >>> you want to use. You can fetch them from the table browser or >>> the download server. There are several "elements" tables in >>> the 46-way conservation track. Decide on what you want to use. >>> Obtain it from the table browser or the download server. >>> >>> You would want to become familiar with the genome browser: >>> http://genome.ucsc.edu/goldenPath/help/hgTracksHelp.html >>> And the table browser: >>> http://genome.ucsc.edu/goldenPath/help/hgTablesHelp.html >>> >>> --Hiram >>> >>> ----- Original Message ----- >>> From: "reza sodaie" >>> To: "Hiram Clawson" >>> Sent: Friday, January 27, 2012 10:41:07 AM >>> Subject: Re: [Genome] GP file >>> >>> I have encountered this kind of file in these vignettes. >>> and is there any element.bed file? >>> >> >> > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
