Hi Minho, I loaded a couple .wig custom tracks to test out and the colors are showing correctly in all tracks. As I can't reproduce this issue, can you save a session where you're seeing this problem and send me the URL (help: http://genome.ucsc.edu/goldenPath/help/hgSessionHelp.html)?
Thanks! Greg On 1/31/12 11:25 AM, Hiram Clawson wrote: > > Hi Hiram, > > Thank you for your anwer. > Actually, I tried to use altColor which seemed to work. > But when we have multiple data sets, only the data set which clicked > the most recently shows the color correctly. > The negative strands of all other data sets turn to gray. > Do you know how I can get around this? > > > Minho > > > > On Tue, Jan 24, 2012 at 3:48 PM, Hiram Clawson <[email protected]> > wrote: >> If your data values for your negative strand values are actually >> negative >> below zero, use the altColor setting to define the color for negative >> values. >> See also: http://genome.ucsc.edu/goldenPath/help/wiggle.html >> >> --Hiram >> >> >> Minho Chae wrote: >>> >>> Hello, >>> >>> I cannot control the color of bigWig files by using "color" parameter >>> in the track line. >>> I used the following: >>> >>> track type=bigWig name="E2_0m+" db=hg18 visibility=2 >>> windowingFunction=maximum viewLimits=0:100 autoScale=off color=255,0,0 >>> bigDataUrl=http://server/data/E20m_Plus.bw >>> track type=bigWig name="E2_0m-" db=hg18 visibility=2 >>> windowingFunction=maximum viewLimits=-100:0 autoScale=off >>> color=0,0,255 bigDataUrl=http://server/data/E20m_Minus.bw >>> >>> The plus strand (first line) is perfectly fine showing red color >>> according to the RGB value of 255,0,0 >>> But for the minus strand (second line) does not show blue rather it >>> shows paled blue. >>> I tried with other colors, but all the colors I used for the minus >>> strand I am getting tone-down version of color. >>> How can I display proper colors for the minus strand? >>> >>> I would very appreciate any help regarding this problem. >>> >>> Thank you. >>> >>> Minho Chae > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
