Hello, Rocky. The "Note: "multiple" option is not supported for position format" message you are seeing appears regardless of whether or not you are using valid data in your liftOver. In attempting to lift over the coordinates associated with the picTar data, we have run several successful liftOvers and have seen that message appear each time. We are currently looking into this issue.
As for the error in performing your liftOver, it appears that the bin column (the first column of data in the text file) is causing problems. Ideally, you want to enter coordinates only in a liftOver. I would recommend extracting the chromosome number and the start and end coordinates from the text file (columns 2, 3 and 4) and performing a liftOver using only that data. Please contact us again at [email protected] if you have any further questions. --- Steve Heitner UCSC Genome Bioinformatics Group -----Original Message----- From: [email protected] [mailto:[email protected]] On Behalf Of ??? ? Sent: Tuesday, January 31, 2012 9:01 PM To: [email protected] Subject: [Genome] [Rocky] - To convert human genome 17 to 18 assemby using LIFTOVER UCSC Group I would like to convert Pictar miRNA5Way.txt downloaded from http://download.cse.ucsc.edu/goldenPath/hg17/database/ to human genome 18 assemby using LIFTOVER. I tried by uploading the pictar file using only default option but there was an error at result session like Note: "multiple" option is not supported for position format. Could you please tell me why it appears as such. I would be glad and appreciate for your support. Regards, Rocky _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
