Hi, all, A reframing of my earlier question*:
(This question is in the context of the hg19 Human genome assembly.) How can I join the information in the knownGene and knownCanonical tables on transcript ID so that I get all the information in knownGene but restricted to the transcripts that co-occur? Is the best way to do this an "intersection"? I've tried and failed thus far to make that meet my needs, but it sounds conceptually promising. Or perhaps I need to export a list of transcript IDs from knownCanonical and then feed it back in as a restriction? I know this is possible because somebody in my lab previously generated a .bed file of this data, but the details have been lost to the annals of history, and I'm failing to recreate the output either in bed format or in GTF format (my actual objective). Any guidance appreciated. Thanks! -John *Presumably too vague, given the lack of response. _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
