Hello Morita, We don't host any gene fusion annotations in the Genome Browser, but one of our engineers pointed out that COSMIC (http://www.sanger.ac.uk/genetics/CGP/cosmic/News) has curated gene fusions.
I hope this helps! -- Brooke Rhead UCSC Genome Bioinformatics Group On 2/9/12 6:21 PM, Morita Pagan wrote: > Hello, > I am desperately trying to find a way to obtain the genomic location of > some very common gene rearrangements reported in cancer. I will be looking > at NGS data and want to see for example if RET/PTC3, RET/PTC1, PAX8/PPARG > rearrangements are in my data. I have scoured the internet looking for a > specialized database to no avail. There are hundreds of reports listing > these common mutations, but so far they all fail to indicate exactly where > to look for the fusion events. can you please help? > Thank you! > Morita > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
