Dear list, I want to remap HG U133 plus 2 array probe sequence to genome. So I can check which probe mapped to multiple genome position. In ucsc web site, it is describe as:
shows the location of the consensus and exemplar sequences used for the selection of probes on the Affymetrix HG-U133 Plus 2.0 chip. Consensus and exemplar sequences were downloaded from the Affymetrix Product Support and mapped to the genome using blat followed by pslReps with the parameters: -minCover=0.3 -minAli=0.95 -nearTop=0.005 Could you share me the detail commands? I do not know how to use blat and pslReps. Thank you in advance. _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
