Hi Vinayak, You can get this info from the Table Browser ().
Select... Group: Genes and Gene Pred..... Track: RefSeq Genes Table: refSeq Region: genome Use the Identifiers > Paste List button to enter your list of gene names (e.g. CDKN2A). Output format: BED If you want to download the data, give it a file name. Click Get Output. Now on the next page you'll see options for: Create one BED record per: 5' UTR Exons Coding Exons 3' UTR Exons If you have any additional questions, please reply to: [email protected] - Greg Roe UCSC Genome Bioinformatics Group On 2/13/12 5:41 PM, Vinayak Kulkarni wrote: > Dear UCSC folks, > When I select a track (say Refseq) for a particular gene (CDKN2A for > example) and I use dense option I see that the individual transcripts and > their UTRs collapsed into a nice thick and thin bar on the browser. > > How do I get that information via a bed file i.e. what parts (co-ordinates) > at gene level are coding and what parts are UTRs? > > Thanks in advance, > Vinayak. > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
