Hi, I used the following track line to visualize bigwig file of negative strand. It had negative values and hence I used altColor for representing blue. The track is perfectly fine displaying the blue color for the negative strand.
track type=bigWig name="m-" db=hg18 visibility=2 windowingFunction=maximum viewLimits=-100:0 autoScale=off smoothingWindow=6 color=0,0,255 altColor=0,0,255 bigDataUrl=http://server:/Minus.bw However, when I am trying to save it as PDF file, the blue color is changed to pale blue. Could please help me in fixing this. Best, Anusha Nagari ________________________________ UT Southwestern Medical Center The future of medicine, today. _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
