Hi Anton, The Ensembl Genes track contains a table noting snoRNAs. From the table browser, select rn4 and then:
group: Gene and Gene Pred... track: Ensemble Genes table: ensemblSource Click the create filter button and where it says "source [does] match", enter: snoRNA submit output format: selected fields from primary and related tables. get output Check "name" and "source", and then under "Linked Tables" check 'ensGene'. (You might also find the ensemblToGeneName table helpful if you need gene names.) click "Allow Selection from Checked Tables" Now you can select any fields from the rn4.ensGene table that you might want as well (e.g. chrom, cdsStart, cdsEnd, ...). Click "get output". I think that's what you're looking for. If not, please let us know: [email protected] - Greg Roe UCSC Genome Bioinformatics Group On 2/20/12 1:36 AM, Anton Kratz wrote: > Dear UCSC team, > > is there a way to get snoRNAs for rat, rn4 assembly, in the UCSC Genome > Browser and/or table browser? > > Thanks, > Anton > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
