Convert your file to a bed file: http://genome.ucsc.edu/FAQ/FAQformat.html#format1
It is a simple rearrangement of the columns from the example you list. You can then use either the score column or the strand column in the bed file to use different colors in the custom track. Convert your group names to either a score or a strand indicator. Use the track line options to define your colors: http://genome.ucsc.edu/goldenPath/help/customTrack.html#TRACK --Hiram ----- Original Message ----- From: [email protected] To: [email protected] Sent: Tuesday, February 28, 2012 7:08:54 AM Subject: [Genome] gff-format group-colors Hey, I've got a gff3 file with different groups assigned in the last column: chr2L HMM Prediction experimental_feature 23362 53962 3 . . group3 chr2L HMM Prediction experimental_feature 53962 54362 5 . . group5 Is there a way to assign individual colors to the different groups in gff? _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
