Hello, How can I view a gene promoter in the UCSC browser? Is there a track to view promoter regions and the gene coding region at the same time? Also, does the UCSC have a defined region for the promoter of each gene individually, or does it just give you a preset upstream region (such as 1,2,and 3kb upstream, but no defined region).
I have custom tracks of DNA methylation data and I would like to see where this methylation is occurring in comparison to the transcriptional regulatory regions (Transcription factor binding sites, etc.). The gene I am specifically looking at is klf4. I am able to reference it to the nucleotide regions, but I cannot tell if the region in within the gene itself or within the promoter region. Additionally, it would be helpful if I could compare these regions between mouse and human genes at the same time. Any assistance would be greatly appreciated!! Thank you, Jessilyn -- Jessilyn Dunn Graduate Research Assistant, Jo Lab Dept. of Biomedical Engineering Georgia Institute of Technology & Emory University _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
