Good Morning Andrey: We don't know what the resolution is for this situation. As you noticed in the mentioned mail list thread, it is often a situation of the enhanced security system in place. If it is not exactly that, I suspect there are configurations in the apache system that are preventing these functions from operating correctly. If you do find a solution to this, please respond to the mail list to aid future users.
--Hiram ----- Original Message ----- From: "Andrey Kartashov" <[email protected]> To: [email protected] Sent: Friday, March 9, 2012 6:23:13 AM Subject: [Genome] CustomTrack upload error (pipeline) Hi, I have problem with upload wig or gzipped files (bed uncompressed files uploaded well). I've found this thread https://lists.soe.ucsc.edu/pipermail/genome/2011-May/026009.html and checked everything and problem still exist. The exact error message is: " Error in 'chr1.wig.gz' - Operation not permitted error from setpgid (3281, 3280); File 'chr1.wig.gz' - process exited with 100: "[mem]" in pipeline "gzip -dc"". Also I've replaced original /bin/gzip by shell which just make "echo "123">>/tmp/gzipGENOME" and file does not appear. I'm digging, a little pipeline.c but for me, as a beginner in genome browser, it really complected. I've tried set SETUID bit, to run hgCustom program as root but it didn't help. System is: SUSE Linux Enterprise Server 11 (x86_64) uname -a: Linux bmigbweb 2.6.32.46-0.3-default #1 SMP 2011-09-29 17:49:31 +0200 x86_64 x86_64 x86_64 GNU/Linux Do you have any ideas what it can be? -- Sincerely yours Andrey _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
