Hi OG, There actually is no panTro3 gene build available from Ensembl. They supplied annotations on panTro2, and currently they show annotations on panTro4, but they skipped panTro3. We are in the process of building a panTro4 genome browser, and it will include an Ensembl Genes track.
In the meantime, you might be interested in using a track on our "preview" browser on panTro3: http://genome-preview.ucsc.edu/cgi-bin/hgTracks?org=Chimp&db=panTro3 There is a version 61 Ensembl Genes track there that was created for internal use by lifting the coordinates of the Ensembl track on panTro2 to panTro3. I'm not sure whether it will suit your needs, but it might be helpful. Be aware that there is a lot of untested and experimental data on the preview site. Also, lifted data is not as reliable as unlifted data; see: http://genome.ucsc.edu/goldenPath/help/hg18ToHg19LiftOver.html. You can also watch for an Ensembl track to appear on the panTro4 browser on the preview site. If you have further questions, please contact us again at [email protected]. -- Brooke Rhead UCSC Genome Bioinformatics Group On 3/9/12 7:44 AM, Gokcumen, Omer,Ph.D. wrote: > Dear Sir, > > We have been wondering about the estimated time of availability of > Ensemble gene tracks for PanTro3 assembly. > > Thanks for your help. > > All the best, > > -OG > > > > The information in this e-mail is intended only for the person to > whom it is addressed. If you believe this e-mail was sent to you in > error and the e-mail contains patient information, please contact the > Partners Compliance HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to > you in error but does not contain patient information, please contact > the sender and properly dispose of the e-mail. > > > _______________________________________________ Genome maillist - > [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
