Hello, I meet a problem in genome browser when I use RefSeq Genes track.
Here are the first three ncRNA genes I got in a Celegans segment ( WS220/ce10, chrI:12140001-12340000 ), #filter: refGene.name like 'NR\_%' #bin name chrom strand txStart txEnd cdsStart cdsEnd exonCount exonStarts exonEnds score name2 cdsStartStat cdsEndStat exonFrames 677 NR_000137 chrI + 12144973 12145160 12145160 12145160 1 12144973, 12145160, 0 unk unk -1, 677 NR_000138 chrI + 12144973 12145160 12145160 12145160 1 12144973, 12145160, 0 unk unk -1, 677 NR_000137 chrI - 12149569 12149756 12149756 12149756 1 12149569, 12149756, 0 unk unk -1, All three have the same bin; the 1st and 2nd genes are on the same region with different names; the 1st and 3rd genes have the same name but on the different regions. Could you please explain a little about it? By the way, could you please let me know how to retrieve the description of each ncRNA gene on this track, e.g., the type of a ncRNA gene? Thank you very much! Yingfeng _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
