Hi Laura, For future reference, you can tell which Ensembl version is currently being displayed in the Ensembl Genes track by turning the track on in the Genome Browser. There will be a label above the items in the track (currently it says "Ensembl Gene Predictions - Ensembl 65"). Another way to find it is to click on any track item. The Ensembl version will be displayed at the top of the page, for example: "Ensembl Genes (ENST00000342992 - Ensembl 65)."
The information you found in the release log is correct: you would have retrieved Ensembl version 62 data on 6/23/11. (Ensembl version 63 was released on 30 Sep 2011.) > Also, when I click on this webpage on the link for "ensemble version > 62", it takes me to ensemble version 65. Is this a bug? This is not exactly a bug. We generally only maintain one version of a track on the Genome Browser, and any link on the Release Log page will take you to that track. The information of what data was released on what date remains the same, however. Regarding the RefSeq track: the RefSeq track is updated daily in the Genome Browser. So, you would have downloaded whatever RefSeq Genes were available from Genbank as of 6/23/2011. If you have further questions, please contact us again at [email protected]. -- Brooke Rhead UCSC Genome Bioinformatics Group On 3/16/12 9:06 AM, Laura Smith wrote: > Hi, > > Can you please tell me which version of ensemble (the latest) was > available on ucsc browser website by default from table view on > 06/23/2011? > > Also can you please tell me which version of refseq (the latest) was > on UCSC website as of 06/23/2011? > > The reason I am askign is because we have downloaded the refseq and > ensemble transcripts from the ucsc genome browser website on > 06/23/2011, however we do not know which version of ensemble and > refseq downloaded corresponds to as there were no information in the > files or on the website. We are sure we downloaded the latest ones > available from table view, but we don't know which versions they > correspond to. > > I found the following link on your website: > > http://genome.ucsc.edu/goldenPath/releaseLog.html#hg19 > > Also, when I click on this webpage on the link for "ensemble version > 62", it takes me to ensemble version 65. Is this a bug? > > I would appreciate your feedback. > > Laura _______________________________________________ Genome maillist > - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
