Hello Joe, The ensGene table contains Ensembl Gene coordinates. To get to it in the Table Browser (http://genome.ucsc.edu/cgi-bin/hgTables), select the clade, genome, and assembly you are using, then choose:
group: Genes and Gene Prediction Tracks track: Ensembl Genes table: ensGene Make sure "region: genome" is selected, and then hit the "identifiers (names/accessions): paste list" button. Choose the output format you would like and then hit "get output." This should get you the genome coordinates for the Ensembl Genes in your list. If you have further questions, please contact us again at [email protected]. -- Brooke Rhead UCSC Genome Bioinformatics Group On 3/16/12 9:52 AM, Joe White wrote: > Hello, > > Can someone help me with this question? Which UCSC data > tables should be used to obtain UCSC genome coordinates for > a list of ENSEMBL gene IDs? > > Thanks, > Joe White > Mass. Eye and Ear Infirmary > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
