Hi UCSC Staffs, I am trying to download intersection of hg19.description and hg19.refGene following these below steps:
* On http://genome.ucsc.edu/cgi-bin/hgTables + clade: Mammal; genome: Human; assembly: Feb. 2009; group: All Tables; database: hg19; table: description; output format: seleteced fields from primary and related tables; output file: test; file type returned: gzip compressed + Hit "get output" * On next page + Linked Tables: check hg19.gbCdnaInfo + Hit "Allow Selection From Checked Tables" * On next page + Linked Tables: uncheck hg19.gbCdnaInfo; then check hg19.refGene + Hit "Allow Selection From Checked Tables" + On Select Fields from hg19.description: check name + On hg19.refGene fields: check name, chrom, strand, txStart, txEnd, cdsStart, cdsEnd, exonCount, exonStarts, exonEnds, name2 + Hit "get output" It takes a while, then askes me location to save, but the saved file has an error: --------------------------------------------------------------------------- Stopping after 1000000 rows, try restricting region or adding filter --------------------------------------------------------------------------- --------------------------------------------------------------------------- carefulAlloc: Allocated too much memory - more than 6,442,450,941 bytes (6,442,487,599) --------------------------------------------------------------------------- I understand that this might be because the data is too big to be handled by the browser. Please advise me if there is any alternative ways of getting what I want? Thank you in advance, D. _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
