Hello, Kim. We do not host the Arabidopsis data. The first page you referenced is actually one of our mirror sites. For questions regarding the Arabidopsis genome, I would contact the folks that run that mirror. You can find contact information on the Arabidopsis gateway page at http://epigenomics.mcdb.ucla.edu/cgi-bin/hgGateway?org=A.+thaliana&db=araTha 1.
Please contact us again at [email protected] if you have any further questions. --- Steve Heitner UCSC Genome Bioinformatics Group -----Original Message----- From: [email protected] [mailto:[email protected]] On Behalf Of [email protected] Sent: Monday, March 26, 2012 7:38 PM To: [email protected] Subject: [Genome] Question regarding locus coordinate differences from two gbrowsers Hi, I used UCSC GBrowser to view Histone methylation pattern for AT5G49160.1 (MET1 of Arabidopsis). Based on the browser and the link-out web page (http://epigenomics.mcdb.ucla.edu/cgi-bin/hgc?hgsid=37805&o=19949455&t=19955 595&g=genesTAIR7&i=AT5G49160.1&c=chr5&l=19949455&r=19955595&db=araTha1&pix=8 00), both show the position of this locus as Chr5:19949456-19955595. However, on another gbrowser (http://gbrowse.arabidopsis.org/cgi-bin/gbrowse/arabidopsis/?name=AT5G49160. 1), the locus has a different coordinate position Chr5:19932230-19938369. So which one is a more current coordinate? How would all histone methylation positions be interpreted if the gbrower of arabidopsis.org website is the most current? Would everything be shifted by 17226 bp? Any input is greatly appreciated. Thanks, Kim -- Kim T.T. Nguyen, Ph.D. Post-doctoral Researcher Dr. Daniel F. Voytas Laboratory University of Minnesota Dept. of Genetics, Cell Biology,& Development Cargill Building, 350 1500 Gortner Avenue Saint Paul, MN 55108 Phone: 612-625-8416 _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
