Hi Miriam, We are working on a way to preserve this information from the tables, but in the meantime, are referring people to the tools at the Galaxy site. There is a way to export output directly to Galaxy from the Table Browser; select "Send output to Galaxy".
Please contact us again at [email protected] if you have any further questions. --- Luvina Guruvadoo UCSC Genome Bioinformatics Group On 3/28/2012 2:52 AM, Miriam Ragle Aure wrote: > Hi! > > > > I am trying to use Tables in Genome Browser to convert a list genomic > positions into corresponding gene names. However, from my input list of > coordinates I end up with a much longer output list - how can I map each > input row to the output rows? > > Actually, I'm doing this to find the host genes of intronic miRNAs. When > I upload the genomic miRNA positions I thus end up with corresponding > miRNA names; what is the best way of getting as output the protein > coding gene names that these coordinates belong to? Choosing "mRNA and > EST Tracks" as group and "RefSeq Genes" as table? > > > > Thanks a million! > > > > Best regards, > > > > Miriam > > > > > > > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
