Hi Shirley, You can get the 3' UTR sequences from the Table Browser (http://genome.ucsc.edu/cgi-bin/hgTables). If you have never used the Table Browser, some helpful resources are:
http://genome.ucsc.edu/goldenPath/help/hgTablesHelp.html http://www.openhelix.com/cgi/tutorialInfo.cgi?id=28 To get the 3' UTRs, select the human assembly you wish to use and then: group: Genes and Gene Prediction Tracks track: RefSeq Genes table: refGene region: genome output format: sequence If you would like to save output to a file, enter a file name in the "output file" box. Now hit the "get output" button. On the next page, select "genomic," and on the page after that, make sure only the "3' UTR Exons" box is checked. Now hit "get sequence." The result should be all of the 3' UTR sequences from the RefSeq Genes track. If you have further questions, please contact us again at [email protected]. -- Brooke Rhead UCSC Genome Bioinformatics Group On 3/29/12 11:05 PM, Shirley Elias wrote: > Dear Sir, > I was wondering if there's a way to download only the 3'utr seqs of all human > Refseqs from your DB > Thank you > Shirley Elias, Phd student > Yoav Soen's group > Weizmann Institute of Science > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
