Good Afternoon SangChul: Please reduce your bam file to a density graph to see your reads. The genome browser can not display thousands of items in one location. You can draw a density graph to see the density of your reads across the genome. Use the bigWig format: http://genome.ucsc.edu/goldenPath/help/bigWig.html
--Hiram Sang Chul Choi wrote: > Hi, > > I've created a bam track, which nicely shows reads mapped unless the number > of reads is large (less than say 500). When the number of reads is larger > (say larger than 500), the short reads disappear and is shown as single bed > bar like a gene, no short reads. Are there ways of showing all of the reads > even if there are many (or 1000 or 10,000) of reads? > > Thank you, > > SangChul _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
