Hi Haoping, Unfortunately, our funding limits us to supporting mostly mammal genome browsers, along with a few model organism browsers. You could set up a mirror of the UCSC Genome Browser for only C. albicans:
http://genome.ucsc.edu/admin/mirror.html This isn't trivial, however! (I also did a quick search for a publicly available C. albicans mirror, but I didn't see one.) Alternatively, it looks like CGD has a GBrowse browser set up for C. albicans: http://www.candidagenome.org/cgi-bin/gbrowse/candida_21/?ref=Ca21chrR_C_albicans_SC5314;start=1729234;stop=1794843;label=All-SNP-DNA-Translation;width=800;keystyle=between;grid=on I'm not very familiar with GBrowse, but I see an option to "upload your own annotations." I hope this information is helpful. Good luck with your research. -- Brooke Rhead UCSC Genome Bioinformatics Group On 4/20/12 11:23 AM, Haoping Liu wrote: > Hi, > > I would like to use your Genome Browser to view our ChIP-Seq. data in > Candida albicans. But C. albicans genome is not included in your > website. I wonder whether you could load C. albicans genome to your > website. Data files for C. albicans genome are available at > http://www.candidagenome.org/download/ > . If not possible, could you please let me know what other approach I > should take in order to use the UCSC Genome Browser with C. albicans > ChIP-seq. data. Thank you for your help. > > Haoping > > Haoping Liu > Professor, Department of Biological Chemistry > University of California, Irvine > Irvine, CA92697 > (949)824-1137 > [email protected] > > > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
