Hi Alexis, The separate tRNA Genes track displays tRNA genes predicted by a program called tRNAscan-SE, which is maintained by Todd Lowe and his lab here at UCSC. Note that this track may not be available for all assemblies. You can read more about this track on the track description page here: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=danRer7&g=tRNAs. You can also access this page by clicking on the blue "tRNA Genes" link from the Genome Browser display page.
Please contact us again at [email protected] if you have any further questions. --- Luvina Guruvadoo UCSC Genome Bioinformatics Group On 4/26/2012 5:03 AM, Alexis ALLOT wrote: > Hello, > > I would have some questions about the ensGene and ensemblSource tracks. > Why are the tRNA genes directly available on the ensGene track for some > organisms (like dm3, galGal3, etc..) and present in a separate table (tRNAs) > for some others organisms (like hg19, mm9, etc...). > And why (in case of danRer7 for example) are only Mitochondrial tRNA genes > (Mt_tRNA) present directly in the ensGene track, and others tRNAs present in > a separate track ? > > Thanks, > Alexis. > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
