Hello, Jun. You are correct about the date of the sno/miRNA information. If there is ever any doubt about the date of the data in question, look at the appropriate track description page. You can see the sno/miRNA page at http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgRna. Near the top of the page, you will notice "Data last updated" shows 20-Sep-2010. Every track description page has such an entry.
There is a track titled RNA Genes in hg18 (http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg18&g=rnaGene) that contains rRNA information, but there is no equivalent track for hg19. Please contact us again at [email protected] if you have any further questions. --- Steve Heitner UCSC Genome Bioinformatics Group -----Original Message----- From: [email protected] [mailto:[email protected]] On Behalf Of Jun Lu Sent: Thursday, April 26, 2012 11:14 AM To: [email protected] Subject: [Genome] sno/miRNA track data updates and rRNA (ribosomal RNA) track Hi, Luvina: thanks a lot for your quick response. I have two further questions. First, the wgRna.txt.gz in hg19 has a time stamp of Oct 03, 2010, so does that mean that the newest database information for miRNAs from miRBase is not in the file (there have been multiple new versions of miRBase after Oct 2010)? Is there any updates on this track in genome browser that I can get? Second, is there a place I can find a ribosomal RNA track? Thanks much, Jun _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
